The water requirements for Java fern are that the water must be:
1. Wet
2. Not boiling
That plant can tolerate an unheated aquarium at room temp, or much warmer temps. It will grow in soft, acidic water or brackish water. It should NOT be planted in the substrate, however. While it will grow (the thickest growing in the gravel in the lab where I work say so!), it does best as an epiphyte on driftwood or rock. It goes absolutely APE with CO2.
The spots are fairly typical, but do indicate it is not happy, somehow. Light, or more likely nutrients...
anybody?