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Your probably right about the circulation not being enough. I have a little BBA in spots were the flow is nto enough and the co2 isn't able to get to it. Thankfully its on the glass so I don't care too much. I would add something to increase the flow to the other tank and maybe dose excel on that side of the tank to add co2 to the side that doesn't get much. Plus the excel will kill the BBA.
 
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