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I'm not sure that the water temperature gradient in the unheated substrate can create any water currents. In a cold house the bottom of the substrate would be slightly above room temperature and the top would be slightly below tank water temperature. That is in the wrong direction to create any convection currents.
But, the substrate is suffused with water, so it will have a heat conductivity close to that of water, which is pretty good. That means there can't be a big temperature gradient in the substrate - heat is just lost through the substrate to the bottom glass of the tank, another fairly good heat conductor.
My guess is that the plant roots are never cold, with or without the substrate heater.
But, the substrate is suffused with water, so it will have a heat conductivity close to that of water, which is pretty good. That means there can't be a big temperature gradient in the substrate - heat is just lost through the substrate to the bottom glass of the tank, another fairly good heat conductor.
My guess is that the plant roots are never cold, with or without the substrate heater.