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You could run just the pump and not the UV if you want. I run both all the time for 4+ months after new fish, and because I know I had MB in the tank at one time. I have to say though, I've had two of the 5W Submariners and both had the same problem: water leaking into the quarts sleeve where the bulb is. This one hasn't burned out the bulb yet and I doubt I'd t be given another exchange, so I just deal with it. I think when it's been long enough I may remove the light part all together and run it as you say, pump only until the UV is needed again for new fish. I really like how UV has given me good results with LFS fish, though.