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They should be emersed, or at least in shallow water. There are a few, such as C. pontederiifolia that will even try to bloom underwater, although they don't have any mechanism to get their flower to the surface. Some of the normally submersed crypts, such as C. aponogetifolia, bloom normally submersed and are able to get their flowers to the surface. Daylength is important. Experiment at around 12 to 9 hours of light. My limited experience is that I usually get flowers in the spring or the fall. If all else fails, try small amounts of gibberellic acid. See
Davis, Greg and Mike Kane, Inducing Flowering in Cryptocoryne Species, TAG, V8#5 Sept-Oct 1995
Davis, Greg and Mike Kane, Inducing Flowering in Cryptocoryne Species, TAG, V8#5 Sept-Oct 1995